All modules for which code is available
- synkit.CRN.Construct.DAG.crn
- synkit.CRN.Construct.DAG.mod_crn
- synkit.CRN.Construct.DAG.syncrn
- synkit.CRN.Construct.abstract
- synkit.CRN.Construct.arity
- synkit.CRN.Construct.builder
- synkit.CRN.Construct.derivation
- synkit.CRN.Construct.flattener
- synkit.CRN.Construct.keys
- synkit.CRN.Construct.mixtures
- synkit.CRN.Construct.smiles
- synkit.CRN.Construct.state
- synkit.CRN.Construct.strategy
- synkit.CRN.Construct.worker
- synkit.CRN.Pathway.pathfinder
- synkit.CRN.Pathway.reachability
- synkit.CRN.Pathway.realizability
- synkit.CRN.Petrinet.analyzer
- synkit.CRN.Petrinet.net
- synkit.CRN.Petrinet.persistence
- synkit.CRN.Petrinet.semiflows
- synkit.CRN.Petrinet.structure
- synkit.CRN.Props.dynamics
- synkit.CRN.Props.stoich
- synkit.CRN.Props.thermo
- synkit.CRN.Query.kegg_api
- synkit.CRN.Query.kegg_extract
- synkit.CRN.Query.kegg_impute
- synkit.CRN.Query.kegg_parse
- synkit.CRN.Structure.reaction
- synkit.CRN.Structure.rule
- synkit.CRN.Structure.species
- synkit.CRN.Structure.syncrn
- synkit.CRN.Symmetry.automorphism
- synkit.CRN.Symmetry.canon
- synkit.CRN.Symmetry.isomorphism
- synkit.CRN.Symmetry.symmetry
- synkit.CRN.Symmetry.wl_canon
- synkit.CRN.Visualize.crn_vis
- synkit.CRN.Visualize.labels
- synkit.CRN.Visualize.layout
- synkit.CRN.Visualize.palette
- synkit.CRN.Visualize.validation
- synkit.CRN.Visualize.vis
- synkit.Chem.Cluster.butina
- synkit.Chem.Fingerprint.fp_calculator
- synkit.Chem.Fingerprint.smiles_featurizer
- synkit.Chem.Fingerprint.transformation_fp
- synkit.Chem.Molecule.atom_features
- synkit.Chem.Molecule.descriptors
- synkit.Chem.Molecule.formula
- synkit.Chem.Molecule.graph_annotator
- synkit.Chem.Molecule.standardize
- synkit.Chem.Molecule.valence
- synkit.Chem.Reaction.Mapper.wl_mapper
- synkit.Chem.Reaction.aam_validator
- synkit.Chem.Reaction.balance_check
- synkit.Chem.Reaction.canon_rsmi
- synkit.Chem.Reaction.cleaning
- synkit.Chem.Reaction.deionize
- synkit.Chem.Reaction.fix_aam
- synkit.Chem.Reaction.neutralize
- synkit.Chem.Reaction.radical_wildcard
- synkit.Chem.Reaction.standardize
- synkit.Chem.Reaction.tautomerize
- synkit.Chem.utils
- synkit.Graph.Canon.canon_algs
- synkit.Graph.Canon.canon_graph
- synkit.Graph.Canon.nauty
- synkit.Graph.Context.hier_context
- synkit.Graph.Context.radius_expand
- synkit.Graph.FG.api
- synkit.Graph.FG.audit
- synkit.Graph.FG.catalog
- synkit.Graph.FG.detector
- synkit.Graph.FG.model
- synkit.Graph.FG.ring_system
- synkit.Graph.Feature.graph_descriptors
- synkit.Graph.Feature.graph_fps
- synkit.Graph.Feature.graph_signature
- synkit.Graph.Feature.hash_fps
- synkit.Graph.Feature.morgan_fps
- synkit.Graph.Feature.path_fps
- synkit.Graph.Feature.wl_hash
- synkit.Graph.Hyrogen._misc
- synkit.Graph.Hyrogen.hcomplete
- synkit.Graph.Hyrogen.hextend
- synkit.Graph.ITS.its_builder
- synkit.Graph.ITS.its_construction
- synkit.Graph.ITS.its_decompose
- synkit.Graph.ITS.its_destruction
- synkit.Graph.ITS.its_expand
- synkit.Graph.ITS.its_relabel
- synkit.Graph.ITS.normalize_aam
- synkit.Graph.ITS.partial_its
- synkit.Graph.MTG.mcs_matcher
- synkit.Graph.MTG.mtg
- synkit.Graph.MTG.mtg_explore
- synkit.Graph.MTG.utils
- synkit.Graph.Matcher.approx_mcs
- synkit.Graph.Matcher.auto_est
- synkit.Graph.Matcher.automorphism
- synkit.Graph.Matcher.batch_cluster
- synkit.Graph.Matcher.dedup_matches
- synkit.Graph.Matcher.graph_cluster
- synkit.Graph.Matcher.graph_matcher
- synkit.Graph.Matcher.graph_morphism
- synkit.Graph.Matcher.mcs_matcher
- synkit.Graph.Matcher.multi_turbo_iso
- synkit.Graph.Matcher.orbit
- synkit.Graph.Matcher.partial_matcher
- synkit.Graph.Matcher.sing
- synkit.Graph.Matcher.subgraph_matcher
- synkit.Graph.Matcher.turbo_iso
- synkit.Graph.Matcher.wl_sel
- synkit.Graph.Mech.conversion
- synkit.Graph.Mech.electron_accounting
- synkit.Graph.Wildcard.fuse_graph
- synkit.Graph.Wildcard.graph_wc
- synkit.Graph.Wildcard.its_merge
- synkit.Graph.Wildcard.radwc
- synkit.Graph.Wildcard.wc_matcher
- synkit.Graph.Wildcard.wildcard
- synkit.Graph.canon_graph
- synkit.Graph.syn_graph
- synkit.Graph.utils
- synkit.IO.chem_converter
- synkit.IO.data_io
- synkit.IO.debug
- synkit.IO.gml_to_nx
- synkit.IO.graph_to_mol
- synkit.IO.mol_to_graph
- synkit.IO.nx_to_gml
- synkit.Rule.Apply.reactor_rule
- synkit.Rule.Apply.retro_reactor
- synkit.Rule.Apply.rule_matcher
- synkit.Rule.Apply.rule_rbl
- synkit.Rule.Compose.compose_rule
- synkit.Rule.Compose.rule_compose
- synkit.Rule.Compose.rule_mapping
- synkit.Rule.Compose.seq_comp
- synkit.Rule.Compose.valence_constrain
- synkit.Rule.Modify.longest_path
- synkit.Rule.Modify.molecule_rule
- synkit.Rule.Modify.prune_templates
- synkit.Rule.Modify.rule_utils
- synkit.Rule.Modify.strip_rule
- synkit.Rule.syn_rule
- synkit.Synthesis.MSR.multi_steps
- synkit.Synthesis.MSR.path_finder
- synkit.Synthesis.Metrics._plot
- synkit.Synthesis.Reactor.batch_reactor
- synkit.Synthesis.Reactor.benchmark
- synkit.Synthesis.Reactor.imba_engine
- synkit.Synthesis.Reactor.mod_aam
- synkit.Synthesis.Reactor.mod_reactor
- synkit.Synthesis.Reactor.partial_engine
- synkit.Synthesis.Reactor.post_syn
- synkit.Synthesis.Reactor.rbl_engine
- synkit.Synthesis.Reactor.rule_filter
- synkit.Synthesis.Reactor.single_predictor
- synkit.Synthesis.Reactor.strategy
- synkit.Synthesis.Reactor.syn_reactor
- synkit.Vis.chemical_space
- synkit.Vis.crn_vis
- synkit.Vis.embedding
- synkit.Vis.graph_visualizer
- synkit.Vis.its_drawer
- synkit.Vis.molecule_drawer
- synkit.Vis.mtg_drawer
- synkit.Vis.reaction_drawer
- synkit.Vis.rule_vis
- synkit.Vis.rxn_vis
- synkit.Vis.visual_drawer
- synkit.Vis.visual_model